STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0998Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (166 aa)    
Predicted Functional Partners:
PBPRA2386
Hypothetical Rec2-related protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.731
PSPTO092
Putative leader peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.663
VV20716
Hypothetical CheY-like receiver protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.552
PBPRA1708
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.534
SSB
Putative single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.522
S4240
Conserved hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA.
 
     0.518
Z4768
Hypothetical ComF-related protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.507
Z4656
Hypothetical Smf protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.498
PILC
Putative Type IV pilin biogenesis protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.484
MSHG
Putative MSHA biogenesis protein MshG; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.484
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.