STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Y0438Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (116 aa)    
Predicted Functional Partners:
GLPQ
Putative glycerophosphoryl diester phosphodiesterase; Predicted by orpheus program; predicted by glimmer program.
 
  
  0.984
T0582
Putative glycerophosphoryl diester phosphodiesterase; Predicted by orpheus program; predicted by glimmer program.
     
 0.926
T3336
Putative lysophospholipase; Predicted by orpheus program; predicted by glimmer program.
    
  0.902
Z5346
Hypothetical lysophospholipase L2; Predicted by orpheus program; predicted by glimmer program.
    
  0.902
Y0047
Putative ATP:glycerol 3-phosphotransferase (Glycerokinase)(GK); Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.642
GLPF
Putative glycerol uptake facilitator protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.474
PA4034
Putative aquaporin Z; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.474
PBPRB1004
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.467
GLPD
Putative aerobic glycerol-3-phosphate dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.431
Y0404
Putative anaerobic glycerol-3-phosphate dehydrogenase, subunit A; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.431
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.