STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO4458Putative carbohydrate kinase, PfkB family; Predicted by orpheus program; predicted by glimmer program. (278 aa)    
Predicted Functional Partners:
C4676
Hypothetical ribose ABC transporter protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
 
 0.708
SO4504
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.558
hisA
Putative phosphoribosylformimino-5-aminoimidazole carboxamideribonucleotide isomerase; Predicted by orpheus program; predicted by glimmer program.
  
    0.524
PBPRB1011
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.487
PBPRB1010
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.476
RSC2632
Putative ABC-type cobalt transport system, ATPase component; Predicted by orpheus program; predicted by glimmer program.
 
     0.438
SO4636
Hypothetical lipoprotein; Predicted by orpheus program; predicted by glimmer program.
  
     0.429
STY0706
Putstive inosine-uridine preferring nucleoside hydrolase family protein; Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively.
 
  
 0.417
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.409
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.