STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB1013Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (326 aa)    
Predicted Functional Partners:
PBPRA0992
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.708
VV11743
Hypothetical transcription regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.676
RB5308
Putative melibiose operon regulatory protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.628
PA5174
Hypothetical beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.620
PBPRA1671
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.606
PBPRB0224
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.546
VPA0938
Hypothetical AraC-family transcriptionalregulatory protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.496
PBPRA1672
Hypothetical transcriptional regulator, AraC family; Predicted by orpheus program; predicted by glimmer program.
 
   0.492
RSC0132
Hypothetical bacterial regulatory helix-turn-helix protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.492
ECS3950
Putative DNA-directed RNA polymerase, sigmasubunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.482
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.