STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EBIG6842Putative deoxycytidylate deaminase; Predicted by orpheus program; predicted by glimmer program. (149 aa)    
Predicted Functional Partners:
VV0679
Putative thymidylate synthetase (thyA); Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
  
 
 0.937
STY1301
Putative thymidine kinase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.930
HD1933
Putative thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
  
 0.930
YJJG
Putative haloacid dehalogenase-like hydrolase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
  0.910
MSSA
Putative cytidylate kinase; Predicted by orpheus program; predicted by glimmer program.
    
  0.903
ECS0533
Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
 
  0.901
SO3317
Hypothetical 5`-nucleotidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
 
  0.901
PBPRB1892
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
 
  0.901
SF2367
Putative hydrolase of HD superfamily; Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates.
     
  0.900
surE
Putative acid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
  0.900
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.