STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Y1095Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (152 aa)    
Predicted Functional Partners:
Y1096
Putative protease; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.989
VV1475
Cobalamin 5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.854
RB1114
Putative stomatin-like protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.834
PBPRB0890
Hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.592
VV12848
Hypothetical sensor histidine kinase; Predicted by orpheus program; predicted by glimmer program.
  
    0.568
PLU4578
Putative hflC protein; HflC and HflK could regulate a protease.
 
 
 0.531
SF4329
Putative Membrane protease subunits; HflC and HflK could encode or regulate a protease.
 
 
 0.524
RS02759
Putative cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
   
    0.492
BLR8122
Hypothetical diadenosine tetraphosphate hydrolase; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.490
HD1193
Putative phosphatidate cytidylyltransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the CDS family.
   
    0.484
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.