STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YMDCHypothetical protein; Predicted by orpheus program; predicted by glimmer program. (510 aa)    
Predicted Functional Partners:
PLU2487
Putative cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
  
  
 
0.927
ECS0471
Putative phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).
     
 0.918
VVA0266
Hypothetical phosphatidylglycerophosphatase B; Predicted by orpheus program; predicted by glimmer program.
    
 0.909
PBPRB1026
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.557
RSC0835
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
    
 0.547
PBPRA1346
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.541
PBPRB1793
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.444
PBPRA2386
Hypothetical Rec2-related protein; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.438
ECS4462
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.437
T0346
Putative inosine-5-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
 
 
 0.425
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.