STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB1027Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (785 aa)    
Predicted Functional Partners:
PBPRB1028
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     0.993
PBPRB1029
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.888
BRA0014
Putative 2,3-dihydro-2,3-dihydroxybenzoatesynthetase, isochorismatase; Predicted by orpheus program; predicted by glimmer program.
  
    0.881
PLU2320
Hypothetical non-ribosomal peptide synthetase; Predicted by orpheus program; predicted by glimmer program.
  
    0.871
PBPRB1031
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.860
CV0599
Putative cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.779
PSPTO200
Putative cytochrome c oxidase, subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.756
PETJ
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.756
PBPRB0863
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.756
SMA1276
Putative nitric-oxide reductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.756
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.