STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S2921Hypothetical transcriptional regulator GlpR; Predicted by orpheus program; predicted by glimmer program. (264 aa)    
Predicted Functional Partners:
VVA0192
Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.747
VVA0188
Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.746
Y2886
Putative 1-phosphofructokinase; Predicted by orpheus program; predicted by glimmer program; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.704
VV20278
Putative acetyltransferase; Predicted by orpheus program; predicted by glimmer program.
    
   0.633
SF2252
PTS system, fructose-specific IIBC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.595
C2620
Putative tagatose 6-phosphate kinase; Predicted by orpheus program; predicted by glimmer program.
 
     0.515
ECS4016
Putative phosphosugar isomerase; Predicted by orpheus program; predicted by glimmer program.
 
     0.434
Y0404
Putative anaerobic glycerol-3-phosphate dehydrogenase, subunit A; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.432
SF3166
Hypothetical GlpR, transcriptional regulators of sugar metabolism; Predicted by orpheus program; predicted by glimmer program.
 
    
0.413
Y0047
Putative ATP:glycerol 3-phosphotransferase (Glycerokinase)(GK); Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.401
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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