STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C2620Putative tagatose 6-phosphate kinase; Predicted by orpheus program; predicted by glimmer program. (434 aa)    
Predicted Functional Partners:
CPE2626
Putative aldolase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.917
CPE2626-2
Putative tagatose-bisphosphate aldolase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.917
PFKA
Putative 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
     
 0.910
SCO5848
Putative tagatose 6-phosphate kinase; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.903
SF3166
Hypothetical GlpR, transcriptional regulators of sugar metabolism; Predicted by orpheus program; predicted by glimmer program.
 
     0.815
ECS4016
Putative phosphosugar isomerase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.810
PLU0178
Putative 2-keto-3-deoxy-6-phosphogluconatealdolase; Predicted by orpheus program; predicted by glimmer program.
     
  0.800
EDA
Putative 4-hydroxy-2-oxoglutaratealdolase/2-deydro-3- deoxyphosphogluconate aldolase; Predicted by orpheus program; predicted by glimmer program.
     
  0.800
VV21072
Putative 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Predicted by orpheus program; predicted by glimmer program.
     
  0.800
PLU0178-2
Putative 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Predicted by orpheus program; predicted by glimmer program.
     
  0.800
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.