STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV2810Putative dehydrogenase; Predicted by orpheus program; predicted by glimmer program. (235 aa)    
Predicted Functional Partners:
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.781
SCO3915
Hypothetical MFS transporter; Predicted by orpheus program; predicted by glimmer program.
 
     0.667
RB0795
Putative transcriptional regulator, LysR family; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
       0.606
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.594
SMC00430
Hypothetical oxidoreductase protein; Predicted by orpheus program; predicted by glimmer program.
  
 
   0.558
MA0415
Hypothetical oxidoreductase, short-chain dehydrogenase/reductase family; Predicted by orpheus program; predicted by glimmer program.
  
     0.530
PBPRA2502
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.525
SO2777
Putative malonyl Coa-acyl carrier protein transacylase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.510
FABG-3
Hypothetical 3-oxoacyl-(acyl carrier protein) reductase; Predicted by orpheus program; predicted by glimmer program.
  
     0.496
BRA0777
Hypothetical short chain dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
  
     0.493
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.