STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PBPRB1055Hypothetical dinitrification protein NorD; Predicted by orpheus program; predicted by glimmer program. (613 aa)    
Predicted Functional Partners:
SMA1272
Putative denitrification regulatory protein NirQ; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.994
NE2004
Putative nitric-oxide reductase subunit B; Predicted by orpheus program; predicted by glimmer program; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.988
SMA1276
Putative nitric-oxide reductase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.986
NOSR
Hypothetical NosR, Regulator of nitric oxide reductase transcription; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.948
RA0647
Hypothetical nosL protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.932
RS02088
Hypothetical NosD, Nitrous oxidase accessory protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.931
PHG248
Hypothetical nitrous oxide metabolic protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.923
NOSZ
Putative NosZ, Nitrous oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
 
    0.921
XAC3379
MoxR-like ATPases; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.823
VV20055
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.798
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.