STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VP2167Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (84 aa)    
Predicted Functional Partners:
S2901
Putative autoinducer-2 production protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
 
  
 0.664
ATU1271
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.548
VV11271
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.521
PSPTO114
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.466
PBPRA1013
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0319 family.
  
     0.464
JHP0012
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.437
VV1523
Putative tricarboxylic transport TctB; Predicted by orpheus program; predicted by glimmer program.
  
     0.426
SMC00430
Hypothetical oxidoreductase protein; Predicted by orpheus program; predicted by glimmer program.
       0.423
PBPRB0356
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.411
PLU0386
Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
    0.405
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.