STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRANSPOSPutative ISVme-ORF2; Predicted by orpheus program; predicted by glimmer program. (107 aa)    
Predicted Functional Partners:
PBPRB1077
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.802
PBPRB1075
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.687
PP4025
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.658
PSPTO559-2
Hypothetical ISPpu15, transposase Orf2; Predicted by orpheus program; predicted by glimmer program.
 
     0.631
PLU0002
Putative DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initia [...]
      
 0.618
S0300
Putative DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
      
 0.618
PP3985-9
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
 
     0.559
PP3985
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
 
     0.557
PP3985-2
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
 
     0.557
PP3985-3
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
 
     0.557
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.