STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB0408Hypothetical oxidoreductase protein; Predicted by orpheus program; predicted by glimmer program. (351 aa)    
Predicted Functional Partners:
PBPRB1080
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.896
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.828
AGR_L_20
Hypothetical phosphopantetheinyl transferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the P-Pant transferase superfamily.
    
   0.650
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.590
PLU2321
Putative AMP-binding enzyme; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.539
PFAA
Omega-3 polyunsaturated fatty acid synthase PfaA; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.480
VPA0243
Putative virK protein; Predicted by orpheus program; predicted by glimmer program.
       0.453
WAVC
Conserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 
 0.450
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.