STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VV21408Putative glycosidase; Predicted by orpheus program; predicted by glimmer program. (687 aa)    
Predicted Functional Partners:
SPY1301
Hypothetical ABC-type sugar transport systems,permease components; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.684
PBPRA1438
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.681
PULA
Putative pullulanase precursor; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
  
 0.681
C5003
Putative maltose ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.672
MALG
Putative ABC-type maltose transport system,permease component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.672
PBPRB0717
Hypothetical maltose/maltodextrin-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.646
YPO0854
Hypothetical ABC-type maltose transport systems,permease component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.629
glgA
Putative glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.613
SF4171-2
Putative maltose-binding periplasmic proteins/domains; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins. Belongs to the bacterial solute-binding protein 1 family.
 
  
 0.609
S4512
Putative PTS system, trehalose-specific IIBCcomponent; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.595
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.