STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAV1788Hypothetical saccharopine dehydrogenase; Predicted by orpheus program; predicted by glimmer program. (353 aa)    
Predicted Functional Partners:
PSPTO022
Putative diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.901
ALR
Putative alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.526
ALR-2
Putative alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.526
ALR-3
Putative alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.526
VP1755
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.525
PBPRB1741
Hypothetical carnitine o-acyltransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the carnitine/choline acetyltransferase family.
  
     0.504
PBPRB0538
Hypothetical two-component sensor; Predicted by orpheus program; predicted by glimmer program.
  
     0.475
PBPRB1011
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.468
PBPRA1827
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.464
PBPRB0060
Putative BaeS, Signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
  
     0.464
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.