STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PSPTO274Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program. (125 aa)    
Predicted Functional Partners:
PP4064
Putative acyl-CoA dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
    0.738
VPA0662
Hypothetical SoxR, transcriptional regulators; Predicted by orpheus program; predicted by glimmer program.
  
     0.723
RS03236
Putative propionyl-CoA carboxylase(beta subunit) protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.631
CBU0520
Putative hydroxymethylglutaryl-CoA lyase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.623
CV2085
Putative methylmalonate-semialdehyde dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
    0.587
rpoB
Putative DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.572
MERR2
Hypothetical merR protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.558
PA3925
Putative acyl-CoA thiolase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.533
RSC0269
Putative propionyl-CoA carboxylase(beta subunit) protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.524
MERR-2
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
  
     0.496
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.