STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RS03236Putative propionyl-CoA carboxylase(beta subunit) protein; Predicted by orpheus program; predicted by glimmer program. (283 aa)    
Predicted Functional Partners:
RSC0269
Putative propionyl-CoA carboxylase(beta subunit) protein; Predicted by orpheus program; predicted by glimmer program.
  
  0.998
PP4064
Putative acyl-CoA dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.993
C4793
Putative fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 
 0.970
C2886
Putative fatty oxidation complex, alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.970
CBU0520
Putative hydroxymethylglutaryl-CoA lyase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.929
BLL0116
Putative enoyl-CoA hydratase/isomerase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.882
RSC0267
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.817
CAIA
Putative acyl-CoA dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.775
BPP3767
Putative 4-hydroxyphenylpyruvate dioxygenase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.748
RS03529
Putative fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.678
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.