STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBU0520Putative hydroxymethylglutaryl-CoA lyase; Predicted by orpheus program; predicted by glimmer program. (300 aa)    
Predicted Functional Partners:
BLL0116
Putative enoyl-CoA hydratase/isomerase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.965
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.960
PA3925
Putative acyl-CoA thiolase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.960
RSC0269
Putative propionyl-CoA carboxylase(beta subunit) protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.954
MLR6539
Putative acetyl-CoA synthase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.952
FADA
Putative Acetyl-CoA acetyltransferase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
  
 
 0.941
SF2420
Putative fatty oxidation complex, beta subunit; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
  
 
 0.941
SPYM3_13
Putative acetyl-CoA acetyltransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.941
RSC0267
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.935
RS03236
Putative propionyl-CoA carboxylase(beta subunit) protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.929
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.