STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VV21004Putative ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program. (227 aa)    
Predicted Functional Partners:
VPA0559
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.966
VPA0558
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.950
VV21005
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.921
VP1997
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.913
VPA0561
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.900
VPA0557
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.872
VPA0017
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.709
cysS2
Hypothetical cysteinyl-tRNA synthetase (cysS); Predicted by orpheus program; predicted by glimmer program; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.640
PLU2814
Putative ABC transporter integral membrane subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.616
HD1961
Putative ribosomal subunit protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
   
 0.612
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.