Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP3564Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program. (322 aa)    
Predicted Functional Partners:
PBPRA0992
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.629
PBPRB0224
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.628
RS05428
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.606
SO0122
Putative transporter protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.586
RSP1115
Hypothetical transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program.
 
   0.558
PBPRA0460
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.555
VV11743
Hypothetical transcription regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.552
ECS3950
Putative DNA-directed RNA polymerase, sigmasubunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.482
PBPRA1671
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.476
PA0780
Hypothetical transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program.
 
   0.476
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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