STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T2471Hypothetical ROK family protein; Predicted by orpheus program; predicted by glimmer program. (312 aa)    
Predicted Functional Partners:
SF2252
PTS system, fructose-specific IIBC component; Predicted by orpheus program; predicted by glimmer program.
    
 0.920
YPO2263
Putative mannose-6-phosphate isomer; Predicted by orpheus program; predicted by glimmer program; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.915
VVA0028
Putative glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
    
 0.914
VVA0028-2
Putative glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
    
 0.914
PFKA
Putative 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.913
PLU2275
Putative D-xylose isomerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the xylose isomerase family.
    
 0.913
PGI
Putative Glucose-6-phosphate isomerase; Predicted by orpheus program; predicted by glimmer program.
    
 0.913
PBPRB0321
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.913
S3959
Putative glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.910
STM4085
Putative GlpX protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.906
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.