Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YFMJHypothetical alcohol dehydrogenase, zinc-containing; Predicted by orpheus program; predicted by glimmer program. (331 aa)    
Predicted Functional Partners:
argG
Putative argininosuccinate synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
    
   0.648
XCC3360
Putative ThiJ/PfpI family protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.578
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.527
PBPRA1229
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.517
CV3549
Putative catalase; Predicted by orpheus program; predicted by glimmer program; Belongs to the catalase family.
  
  
 0.511
MT0138
Hypothetical acyl dehydratase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.509
PBPRB1714
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the cytochrome P450 family.
  
   
 0.474
BRA0885
Putative organic hydroperoxide resistance protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.446
RS05245
Putative Trp repressor-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the WrbA family.
   
    0.423
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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