STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECS3028Putative glutathione S-transferase family protein; Predicted by orpheus program; predicted by glimmer program. (219 aa)    
Predicted Functional Partners:
XCC0591
Putative fumarylacetoacetate hydrolase family protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.996
HMGA
Putative oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.992
BPP3767
Putative 4-hydroxyphenylpyruvate dioxygenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.935
PP4490
Putative phenylalanine-4-hydroxylase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.832
T3259
Putative stringent starvation protein A; Predicted by orpheus program; predicted by glimmer program; Belongs to the GST superfamily.
  
 
 
 0.796
rpoC
Putative RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.795
PBPRB0252
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 
 0.788
rpoB
Putative DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.785
ECS3950
Putative DNA-directed RNA polymerase, sigmasubunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.775
rpoA
Putative DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.745
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.