Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STY2448Putative cobalamin synthesis protein; Predicted by orpheus program; predicted by glimmer program. (330 aa)    
Predicted Functional Partners:
PLU4713
Putative ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.863
PLU0671
Putative methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.844
PLU4864
Putative ribosomal protein L28; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.757
SO0874
Putative DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
  
 0.745
SO2005
Hypothetical dksA-type zinc finger protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.680
SO4246
Putative ribosomal protein L33; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.667
CV3064
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.624
FN1813
Putative adhesion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.624
T0986
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.615
PRO0995
Putative TldD protein; Predicted by orpheus program; predicted by glimmer program.
       0.615
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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