STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VVA0969Putative PmbA-related protein; Predicted by orpheus program; predicted by glimmer program. (447 aa)    
Predicted Functional Partners:
PRO0995
Putative TldD protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.990
STY3548
Putative TldD, Zn-dependent proteases and theirinactivated homologs; Predicted by orpheus program; predicted by glimmer program.
 
 
0.887
STY2448
Putative cobalamin synthesis protein; Predicted by orpheus program; predicted by glimmer program.
       0.615
SF3891
Putative ATP-dependent DNA helicase Rep; Predicted by orpheus program; predicted by glimmer program.
      
 0.468
T4096
Putative Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
     
 0.465
DAPA
Putative dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
      
 0.447
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.