STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
BRA0885Putative organic hydroperoxide resistance protein; Predicted by orpheus program; predicted by glimmer program. (140 aa)    
Predicted Functional Partners:
OHRR
Hypothetical transcriptional regulator, MarR family; Predicted by orpheus program; predicted by glimmer program.
  
 0.976
PP1860
Putative transcriptional regulator, MarR family; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.838
Y2168
Putative Ser protein kinase; Predicted by orpheus program; predicted by glimmer program.
   
    0.594
CV3549
Putative catalase; Predicted by orpheus program; predicted by glimmer program; Belongs to the catalase family.
  
  
 0.591
PLU3375
Hypothetical small protein A; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.563
YPO2908
Putative Flavodoxin reductase; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
     
 0.512
VC0047
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.511
PBPRA2462
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.497
STM1377
Putative lipoprotein; Predicted by orpheus program; predicted by glimmer program.
   
    0.496
XCC3360
Putative ThiJ/PfpI family protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.484
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.