STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FN1813Putative adhesion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 9 family. (319 aa)    
Predicted Functional Partners:
FNV1484
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.995
PP3802
Putative putative ATP-binding component of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.995
VPA0165
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.974
LL1318
Hypothetical ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.969
VPA0160
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.968
ZUNB
Putative ABC-type Mn2+/Zn2+ transport system, permease component; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.965
C2271
Hypothetical zinc ABC transporter, periplasmiczinc-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.952
STM1892
Putative zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
 
 0.931
VPA0161
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.911
ATU3179
Hipothetical ABC transporter permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.903
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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