STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TONB2-2Putative TonB2 protein; Predicted by orpheus program; predicted by glimmer program. (227 aa)    
Predicted Functional Partners:
SO1827-2
Putative TonB system transport protein ExbD2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.991
VV20363
Putative biopolymer transport protein ExbB-related protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.979
SO1826-2
Putative TonB system transport protein ExbB2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.977
SO1827
Putative TonB system transport protein ExbD2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.964
SO1824-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.951
VVA0915-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
   0.950
VP0166
Putative biopolymer transport proteinExbB-related protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.914
Y3058
Putative TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.906
SO1826
Putative TonB system transport protein ExbB2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.905
Z3411
Hypothetical receptor; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.888
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.