STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DNAQ-1Putative DNA polymerase III; Predicted by orpheus program; predicted by glimmer program. (214 aa)    
Predicted Functional Partners:
SO2855
Putative DNA polymerase III, epsilon subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.938
PA3232
Putative DNA polymerase III, epsilon subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.934
PLU0943
Putative DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
 
  
0.933
VV20917
Putative DNA polymerase III; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.924
S1535
Putative ATP-dependent helicase, DinG family; Predicted by orpheus program; predicted by glimmer program.
      0.897
DING
Putative ATP-dependent helicase, DinG family; DNA-dependent ATPase and 5'-3' DNA helicase.
      0.854
PLU0386
Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.565
tsf
Putative elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
 
   
 0.543
RSC1144
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.491
PLU2027
Putative excinuclease ABC, subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
   
 0.455
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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