STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPDCPutative 2`,3`-cyclic-nucleotide 2`-phosphodiesterase; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family. (636 aa)    
Predicted Functional Partners:
PBPRB1892
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
 
 
 0.969
SO3317
Hypothetical 5`-nucleotidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
 
0.937
YJJG
Putative haloacid dehalogenase-like hydrolase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.937
UDK
Putative uridine kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
  0.934
ECS0533
Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
 
0.932
SF4273
Putative 2`,3`-cyclic-nucleotide 2`-phosphodiesterase; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
  
 
0.928
STY0706
Putstive inosine-uridine preferring nucleoside hydrolase family protein; Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively.
  
 
  0.914
surE
Putative acid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.905
STM2183
Putative cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
    
  0.904
C5468
Putative purine nucleoside phosphorylase; Predicted by orpheus program; predicted by glimmer program.
    
 0.902
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.