STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB1235Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (157 aa)    
Predicted Functional Partners:
BRA0014
Putative 2,3-dihydro-2,3-dihydroxybenzoatesynthetase, isochorismatase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.747
PBPRB1238
Putative DNA-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0251 family.
 
     0.628
PLU2320
Hypothetical non-ribosomal peptide synthetase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.570
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.539
PBPRB1405
Putative DNA-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0251 family.
 
     0.537
PBPRA3114
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0251 family.
 
     0.522
plsX
Putative fatty acid/phospholipid synthesisprotein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
 
  
 0.511
WS0635
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.511
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.510
PLSX2
Hypothetical Fatty acid/phospholipid biosynthesis enzyme; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.447
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.