STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLTSPutative glutamate permease; Predicted by orpheus program; predicted by glimmer program. (305 aa)    
Predicted Functional Partners:
PLU0248
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.927
TLR1740
Putative ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
    
 
 0.634
PBPRB1904
Hypothetical ferrous ion transport protein B; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.634
ECS1190
Hypothetical bacteriophage replication protein P; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
PGI
Putative Glucose-6-phosphate isomerase; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
C5026
Putative Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
      
 0.618
SO0166
Putative type II secretory pathway, component EpsD; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
ECS1190-2
Hypothetical DNA helicase; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
SMA0665
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.507
BP2180
Hipothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.494
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.