STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VCA0455Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (216 aa)    
Predicted Functional Partners:
PBPRB1332
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.501
ECS3950
Putative DNA-directed RNA polymerase, sigmasubunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.482
PBPRB1303
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.436
PBPRB1690
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.434
GLTS
Putative glutamate permease; Predicted by orpheus program; predicted by glimmer program.
       0.427
PBPRB1013
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.411
PBPRA1646
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.405
SCBAC28G
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.404
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.