STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEN0012Hypothetical rhomboid family protein; Predicted by orpheus program; predicted by glimmer program. (185 aa)    
Predicted Functional Partners:
VPA1132
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.603
STM3061
Hypothetical 5-formyltetrahydrofolatecyclo-ligase-family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.563
SO4202
Putative TatA protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.481
HD0715
Conserved hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
   
 
 0.477
STY4732
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.467
XAC3008
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.455
AMIB
Putative N-acetylmuramoyl-L-alanine amidase; Predicted by orpheus program; predicted by glimmer program.
   
   0.451
YJFJ
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.435
VP1064
Putative potassium channel related protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.426
gcvP
Putative glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
 
     0.413
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.