STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VCA1040Putative amino acid ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program. (315 aa)    
Predicted Functional Partners:
RA0042
Putative amino acid ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.996
WS0279
Putative amino acid ABC transporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
 0.995
ALR3187
Putative amino acid ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 
0.972
C0996
Putative ABC-type amino acid transport/signaltransduction system; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
 0.933
AGR_C_29
Putative amino acid ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.931
BP1181
Putative amino acid ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.924
YCKI
Putative amino acid ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.922
AF0231
Hypothetical binding protein component ofABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.858
PA2923
Hypothetical amino acid ABC transporter, periplasmic amino acid-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
 0.809
CV3085
Putative amino acid ABC transporter, periplasmic amino acid-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.804
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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