Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PBPRB1332Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (228 aa)    
Predicted Functional Partners:
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.809
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.653
STM3515
Putative malT regulatory protein; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box.
       0.550
SCBAC28G
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
   0.504
RSC2021
Putative glutathione S-transferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the GST superfamily.
  
 
   0.502
VCA0455
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.501
BRA0014
Putative 2,3-dihydro-2,3-dihydroxybenzoatesynthetase, isochorismatase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.493
NCU04061
Hypothetical aromatic ring-cleaving dioxygenase; Predicted by orpheus program; predicted by glimmer program.
  
     0.480
PFAA
Omega-3 polyunsaturated fatty acid synthase PfaA; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.455
SO1976
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  0.446
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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