STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FECDHypothetical FecCD-family membranetransport protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (125 aa)    
Predicted Functional Partners:
CV1487
Hypothetical ATP-binding protein ofiron/siderophore ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.966
PHUV
Hypothetical hemin ABC transporter, ATP-binding protein HutD; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.963
ATU5316
Hypothetical iron-siderophoreABC-transporter ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.928
ECS0155
Putative iron(III) ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.927
HMUT
Hypothetical hemin ABC transporter, periplasmichemin-binding protein HutB; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.925
PLU0905
Conserved hypothetical protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Binds vitamin B12 and delivers it to the periplasmic surface of BtuC.
 
 
 0.853
PBPRB1815
Hypothetical permease; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.841
FEPD
Hypothetical permease; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
     0.741
PBPRB1817
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.732
VPA1437
Putative iron(III) ABC transporter, periplasmic iron-compound-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.720
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.