STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BR1715Putative ATP-binding/permease fusionABC transporter; Predicted by orpheus program; predicted by glimmer program. (603 aa)    
Predicted Functional Partners:
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 0.710
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.543
RSC0201
Putative nuclease; Predicted by orpheus program; predicted by glimmer program.
   
   0.496
XAC1547
Hypothetical ABC transporter ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.438
PLU2040
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.432
PBPRB1404
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.422
PBPRB1405
Putative DNA-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0251 family.
       0.422
dnaK2
Putative chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  0.407
dnaK1
Putative DnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  0.406
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.