Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S2570Putative D-serine dehydratase; Predicted by orpheus program; predicted by glimmer program; Belongs to the serine/threonine dehydratase family. DsdA subfamily. (443 aa)    
Predicted Functional Partners:
T1051
Putative L-serine dehydratase 1; Predicted by orpheus program; predicted by glimmer program; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.926
VV12260
Putative L-serine dehydratase 1; Predicted by orpheus program; predicted by glimmer program; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.926
S3912
Putative threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
     
0.920
ALR-2
Putative alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
  0.900
GNTP-2
Putative DsdX permease; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.864
SO2044
Putative lactoylglutathione lyase; Predicted by orpheus program; predicted by glimmer program.
     
  0.800
CPE0447
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     
  0.800
CV2649
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.428
PBPRA2475
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.426
RSC0201
Putative nuclease; Predicted by orpheus program; predicted by glimmer program.
       0.409
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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