STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPA1607Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
HPKR
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
 
    
0.740
VP2944
Hypothetical O-Methyltransferase-relateprotein; Predicted by orpheus program; predicted by glimmer program.
  
     0.573
YPO0629
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.571
VPA1605
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.556
SO0989
Hypothetical transcriptional regulator, LysR family; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
  
     0.494
VV20888
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
  
     0.415
SO4556-2
Hypothetical transcriptional regulator, LysR family; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
  
     0.404
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.