STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC0870-8Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program. (115 aa)    
Predicted Functional Partners:
S0138
Putative polyA polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
    
 
 0.528
SO2874-14
Putative transposase; Predicted by orpheus program; predicted by glimmer program.
       0.477
SO2276-15
Putative transposase and inactivated derivative; Predicted by orpheus program; predicted by glimmer program.
       0.477
RNC
Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
      
 0.464
TNPA
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.437
PBPRB1443
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.422
RSC0835
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.422
PBPRB1441
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.408
PBPRB1442
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.408
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.