STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RFBQRSO2-2Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program. (292 aa)    
Predicted Functional Partners:
Z0275-3
Putative transposase; Predicted by orpheus program; predicted by glimmer program.
     0.899
Z0271-2
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.774
ECS0245
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.774
YPO1874-8
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.714
MT3534-11
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
       0.621
MT3534-12
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
       0.621
IS22-1-7
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
  
     0.474
IS22-1
Transposase [Vibrio cholerae]; Predicted by orpheus program; predicted by glimmer program.
  
     0.468
ISPLU8B
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.437
ISPLU8B-6
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.437
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.