STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VP2006Putative suppressor for copper-sensitivity B precursor; Predicted by orpheus program; predicted by glimmer program. (711 aa)    
Predicted Functional Partners:
T1804
Hypothetical thioredoxin; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.974
PLU3551
Hypothetical protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
 
 0.926
T1805
Hypothetical outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.912
C2732
Putative thiol:disulfide interchange protein DsbE; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.877
PHG219
Hypothetical thiol:disulfide interchange protein DsbE; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.877
MSRB
Putative PilB-related protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.835
MSRA
Putative peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.755
SA2453
Putative peptide methionine sulfoxidereductase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.755
ASL7641
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.742
VPA1271
Putative thiol:disulfide interchange protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.694
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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