STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T1804Hypothetical thioredoxin; Predicted by orpheus program; predicted by glimmer program. (214 aa)    
Predicted Functional Partners:
VP2006
Putative suppressor for copper-sensitivity B precursor; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.974
AHPC
Putative antioxidant, AhpC/Tsa family; Predicted by orpheus program; predicted by glimmer program.
  
 0.775
Y0988
Putative antioxidant, AhpC/Tsa family; Predicted by orpheus program; predicted by glimmer program.
  
 0.775
CV0599
Putative cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.727
AT3G0895
Hypothetical Sco1-related protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.716
PBPRB1551
Hypothetical thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.716
YPO1265
Putative ATP-dependent helicase; Predicted by orpheus program; predicted by glimmer program.
   
 0.710
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.710
WAVC
Conserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.705
MSRA
Putative peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.700
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.