STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STY2450Putative lipoprotein NlpC; Predicted by orpheus program; predicted by glimmer program. (168 aa)    
Predicted Functional Partners:
Y0418
Hypothetical cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.807
ECS2540
Putative tail-specific protease; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.779
LYTE
Hypothetical Cell wall-associated hydrolases; Predicted by orpheus program; predicted by glimmer program.
  
     0.764
HD1589
Hypothetical lipoprotein precursor, NlpI; May be involved in cell division.
    
 
 0.758
S2387
Putative elongation factor P family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the elongation factor P family.
 
    0.642
PBPRB1274
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.533
STY2448
Putative cobalamin synthesis protein; Predicted by orpheus program; predicted by glimmer program.
 
      0.528
PBPRB1277
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.521
AMIB
Putative N-acetylmuramoyl-L-alanine amidase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.487
ALL7175
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.479
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.