Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
STY4862Hypothetical exu regulon transcriptional regulator; Predicted by orpheus program; predicted by glimmer program. (217 aa)    
Predicted Functional Partners:
BR0234
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.507
ATU3137
Hypothetical dicarboxylate-binding periplasmic protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.481
VVA1597
Hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.454
PBPRA3486
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.417
Y2903
Putative mannonate oxidoreductase; Predicted by orpheus program; predicted by glimmer program; Belongs to the mannitol dehydrogenase family.
 
   
 0.412
BRA0014
Putative 2,3-dihydro-2,3-dihydroxybenzoatesynthetase, isochorismatase; Predicted by orpheus program; predicted by glimmer program.
    
   0.410
SF3131
Putative altronate hydrolase, uxaA; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.407
Z2874
Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.405
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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