STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SF3131Putative altronate hydrolase, uxaA; Predicted by orpheus program; predicted by glimmer program. (499 aa)    
Predicted Functional Partners:
PBPRB1516
Hypothetical altronate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
 
 0.996
UXAC
Hypothetical uronate isomerase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.978
UXUA
Putative D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
 
 0.975
YPO1724
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.926
KDUD
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.925
ECS4406
Hypothetical 2-dehydro-3-deoxygluconokinase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.856
C4337
Putative 2-dehydro-3-deoxygluconokinase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.849
YPO3990
Hypothetical carbohydrate kinase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.848
KDGK
Hypothetical 2-dehydro-3-deoxygluconokinase; Predicted by orpheus program; predicted by glimmer program.
    
 0.827
STM3483
Putative ribulose-phosphate 3-epimerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.807
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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