STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SELAHypothetical L-seryl-tRNA(ser) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (471 aa)    
Predicted Functional Partners:
PLU2551
Putative selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.993
EF2567
Hypothetical selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.993
PBPRB1539
Hypothetical selenocysteine-specific translation elongation factor; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.982
SERS
Putative seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.944
GRDE
Hypothetical glycine reductase proprotein GrdE; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.801
GRDB
Hypothetical glycine reductase complex selenoprotein B; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.789
Z0657
Hypothetical ATPase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
 
   
 0.785
ECS0862
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.628
GRDX
Hypothetical GrdX protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.499
VV0578
Hypothetical potassium channel protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.482
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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